Articles in review or revision

Bogan SN, Strader ME, and Hofmann GE. Parental stress alters the fitness effects and genetic correlation of offspring performance traits and their gene expression pathways. bioRxiv. (in revision)

Bogan SN, Sasaki M, and Kelley JL. Improving evolutionary and genomic tests of selection on phenotypic plasticity and plasticity-first evolution. (in revision)

Moosman OW*, Kelley JK, Bogan SN. Mitigating Misassembly and Switch Errors in Phased Genomes of Polar Fishes Reveals Haplotype Diversity in Copy Number of Antifreeze Protein Genes. (invited for special issue at Heredity; in revision)

Cai T, Bogan SN, Tanner RL, Kelley JL, Dowd WW. Tissue-specific plasticity of DNA methylation across intertidal microhabitats in juvenile mussels (Mytilus californianus). (in submission)


Peer reviewed articles

Bogan SN, Surendran N*, Hotaling S, Desvignes T, Bista I, Lins LSF, Eilertsen MH, Le François NR, Algayer T, Hamilton SL, Frandsen PB, Hoffmann FG, and Kelley JL. 2025. Temperature and Pressure Shaped the Evolution of Antifreeze Proteins in Polar and Deep Sea Zoarcoid Fishes. Molecular Biology and Evolution. (accepted; in press)

Bogan SN, Porat OI*, Meneses M*, and Hofmann GE. 2024. Thermal Plasticity Has Greater Fitness Costs among Thermally Tolerant Genotypes of Tigriopus californicus. Functional Ecology 38: 1562–1577.

Bogan SN and Yi SV. 2024. Potential Role of DNA Methylation in Plastic Responses to the Environment across Cells, Organisms, and Populations. Genome Biology and Evolution 16: evae022.

Bogan SN, Johns JW, Griffiths JS, Davenport DL, Schaal SM, Wuitchik SJS, Lotterhos KE, Lou RN, , McGirr JA, Downey-Wall AM, Rivera HE, Roberts SB, Puritz JB, and Silliman KE. 2023. A dynamic web resource for robust and reproducible genomics in nonmodel species: marineomics.io. Methods in Ecology and Evolution 14: 2709–2716.

Bogan SN, Strader ME, and Hofmann GE. 2023. Associations between DNA Methylation and Gene Expression Depend on Chromatin Accessibility during Transgenerational Plasticity. BMC Biology 21: 149.

Bogan SN, Johnson KM, and Hofmann GE. 2020. Changes in Genome-wide Methylation and Gene Expression in Response to Future pCO2 Extremes in the Antarctic Pteropod Limacina helicina antarctica. Frontiers in Marine Science 6: 788.

Bogan SN and Place SP. 2019. Accelerated Evolution at Chaperone Promoters among Antarctic Notothenioid Fishes. BMC Evolutionary Biology 19: 205.

Bogan SN, McMahon JB, Pechenik JA, and Pires A. 2019. Legacy of Multiple Stressors: Ocean Acidification and Nutrition in Larvae and Juveniles of a Marine Gastropod. Biological Bulletin 236: 159–173.

* = undergraduate mentee